Fitting Markov property to genetic sequences

Jurgita Židanavičiūtė; Tomas Rekašius

doi:10.15388/LMR.2006.30727

Articles

Jurgita Židanavičiūtė

Vilnius Gediminas Technical University

Tomas Rekašius

Vilnius Gediminas Technical University

Published 2023-09-21

https://doi.org/10.15388/LMR.2006.30727

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Keywords

contingency tables
generalized logit
Markov chains

How to Cite

Židanavičiūtė, J. and Rekašius, T. (2023) “Fitting Markov property to genetic sequences”, Lietuvos matematikos rinkinys, 46(spec.), pp. 280–285. doi:10.15388/LMR.2006.30727.

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Abstract

In this paper DNA sequents are modelled as discrete-state Markov chains. Statistical data is presented in contingency tables form. The generalized logit model is used to test the first-order Markov property for all coding and non-coding subsequences of DNA.

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